Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC006538.3-201ENST00000612495 578 ntBASIC14.19□□□□□ -0.14
SKA3Q8IX90 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 SPDYE14P-201ENST00000442619 822 ntBASIC14.18□□□□□ -0.14
SKA3Q8IX90 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms