Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 SSR4P1-203ENST00000599569 2260 ntBASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 ELL2P1-201ENST00000413990 1906 ntBASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 CYP4F24P-201ENST00000586049 1580 ntBASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 AP3S2-216ENST00000617003 1561 ntBASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.43■□□□□ 0.22
CDKL3Q8IVW4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 DNAJB3-201ENST00000446806 729 ntBASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 CEND1P1-201ENST00000451006 455 ntBASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 PPT1-215ENST00000641471 2368 ntBASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AC087481.3-201ENST00000602886 1894 ntBASIC16.42■□□□□ 0.22
CDKL3Q8IVW4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 RARRES2P9-201ENST00000565168 469 ntBASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 AC005829.1-201ENST00000570002 483 ntBASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 AL671883.3-201ENST00000603274 991 ntBASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDKL3Q8IVW4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms