Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AL359258.3-201ENST00000622910 2331 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 MIR648-201ENST00000385046 94 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 CRYGEP-201ENST00000412192 528 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AL031432.2-201ENST00000566714 459 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AL928711.1-201ENST00000570165 459 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AL645728.2-201ENST00000641974 660 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AC010491.1-201ENST00000563101 2797 ntBASIC12.32□□□□□ -0.44
HIST1H1AQ02539 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 RNU1-129P-201ENST00000384064 167 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CSF3-203ENST00000394148 622 ntTSL 3 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 VN2R19P-201ENST00000442399 1052 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AL160237.2-201ENST00000556165 472 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AP001005.1-201ENST00000571755 1248 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 U1.21-201ENST00000580816 167 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AC005622.1-201ENST00000636801 1703 ntBASIC12.31□□□□□ -0.44
HIST1H1AQ02539 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.31□□□□□ -0.44
HIST1H1AQ02539 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HIST1H1AQ02539 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms