Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
NEK3P51956 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NEK3P51956 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.51■□□□□ 0.23
NEK3P51956 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.5■□□□□ 0.23
NEK3P51956 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 FAM220BP-201ENST00000377689 816 ntBASIC16.5■□□□□ 0.23
NEK3P51956 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
NEK3P51956 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
NEK3P51956 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.5■□□□□ 0.23
NEK3P51956 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.5■□□□□ 0.23
NEK3P51956 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.5■□□□□ 0.23
NEK3P51956 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.5■□□□□ 0.23
NEK3P51956 MIR4453-201ENST00000584019 89 ntBASIC16.5■□□□□ 0.23
NEK3P51956 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.5■□□□□ 0.23
NEK3P51956 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.5■□□□□ 0.23
NEK3P51956 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.5■□□□□ 0.23
NEK3P51956 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NEK3P51956 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
NEK3P51956 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.49■□□□□ 0.23
NEK3P51956 PPT1-215ENST00000641471 2368 ntBASIC16.49■□□□□ 0.23
NEK3P51956 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
NEK3P51956 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 AC093724.1-201ENST00000448659 1027 ntBASIC16.49■□□□□ 0.23
NEK3P51956 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.49■□□□□ 0.23
NEK3P51956 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.49■□□□□ 0.23
NEK3P51956 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.49■□□□□ 0.23
NEK3P51956 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.49■□□□□ 0.23
NEK3P51956 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 AC003101.2-201ENST00000612557 442 ntBASIC16.49■□□□□ 0.23
NEK3P51956 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
NEK3P51956 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NEK3P51956 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
NEK3P51956 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms