Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 AC141586.1-203ENST00000567242 366 ntBASIC18.38■□□□□ 0.53
CTCFP49711 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTCFP49711 AC091544.8-201ENST00000619490 361 ntBASIC18.38■□□□□ 0.53
CTCFP49711 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.38■□□□□ 0.53
CTCFP49711 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.38■□□□□ 0.53
CTCFP49711 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTCFP49711 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.37■□□□□ 0.53
CTCFP49711 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.37■□□□□ 0.53
CTCFP49711 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.37■□□□□ 0.53
CTCFP49711 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 ACKR1-201ENST00000368121 1240 ntBASIC18.37■□□□□ 0.53
CTCFP49711 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 MIR1202-201ENST00000408529 83 ntBASIC18.37■□□□□ 0.53
CTCFP49711 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC18.37■□□□□ 0.53
CTCFP49711 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CTCFP49711 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CTCFP49711 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTCFP49711 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.37■□□□□ 0.53
CTCFP49711 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTCFP49711 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTCFP49711 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTCFP49711 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.36■□□□□ 0.53
CTCFP49711 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.36■□□□□ 0.53
CTCFP49711 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 NKAIN1P1-201ENST00000435754 582 ntBASIC18.36■□□□□ 0.53
CTCFP49711 RPL13P2-201ENST00000440687 659 ntBASIC18.36■□□□□ 0.53
CTCFP49711 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.36■□□□□ 0.53
CTCFP49711 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.36■□□□□ 0.53
CTCFP49711 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.36■□□□□ 0.53
CTCFP49711 RN7SL774P-201ENST00000577467 290 ntBASIC18.36■□□□□ 0.53
CTCFP49711 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.36■□□□□ 0.53
CTCFP49711 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.36■□□□□ 0.53
CTCFP49711 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.36■□□□□ 0.53
CTCFP49711 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.36■□□□□ 0.53
CTCFP49711 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTCFP49711 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms