Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HTTP42858 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 LINC02199-201ENST00000506655 2702 ntBASIC17.53■□□□□ 0.4
HTTP42858 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC17.53■□□□□ 0.4
HTTP42858 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.53■□□□□ 0.4
HTTP42858 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HTTP42858 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HTTP42858 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
HTTP42858 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.53■□□□□ 0.4
HTTP42858 AL138799.1-201ENST00000448213 1675 ntBASIC17.53■□□□□ 0.4
HTTP42858 AC022188.1-201ENST00000620960 1664 ntBASIC17.53■□□□□ 0.4
HTTP42858 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 AC098935.1-201ENST00000446057 611 ntBASIC17.52■□□□□ 0.4
HTTP42858 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.4
HTTP42858 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.52■□□□□ 0.4
HTTP42858 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.52■□□□□ 0.4
HTTP42858 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.52■□□□□ 0.4
HTTP42858 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 AC019193.1-201ENST00000506678 823 ntBASIC17.52■□□□□ 0.4
HTTP42858 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HTTP42858 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HTTP42858 AC138894.2-201ENST00000602838 371 ntBASIC17.52■□□□□ 0.4
HTTP42858 AC091544.8-201ENST00000619490 361 ntBASIC17.52■□□□□ 0.4
HTTP42858 AC127024.7-201ENST00000625101 200 ntBASIC17.52■□□□□ 0.4
HTTP42858 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.52■□□□□ 0.4
HTTP42858 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HTTP42858 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.52■□□□□ 0.4
HTTP42858 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
HTTP42858 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
HTTP42858 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.52■□□□□ 0.39
HTTP42858 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.52■□□□□ 0.39
HTTP42858 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
HTTP42858 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HTTP42858 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 KLF2P2-201ENST00000416807 1039 ntBASIC17.51■□□□□ 0.39
HTTP42858 IDS-203ENST00000428056 1213 ntTSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.51■□□□□ 0.39
HTTP42858 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HTTP42858 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.51■□□□□ 0.39
HTTP42858 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 DNM1P30-201ENST00000563586 452 ntBASIC17.51■□□□□ 0.39
HTTP42858 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
HTTP42858 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HTTP42858 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HTTP42858 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
HTTP42858 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HTTP42858 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 IGLV3-15-201ENST00000518356 244 ntBASIC17.5■□□□□ 0.39
HTTP42858 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.5■□□□□ 0.39
HTTP42858 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms