Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.73□□□□□ -1.812e-8■□□□□ 10.6
YBX3P16989 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.822e-8■□□□□ 10.6
YBX3P16989 LGALS1-202ENST00000425542 637 ntTSL 325.1■■□□□ 1.614e-11■□□□□ 10.6
YBX3P16989 LGALS1-207ENST00000489315 516 ntTSL 325.1■■□□□ 1.614e-11■□□□□ 10.6
YBX3P16989 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.64e-11■□□□□ 10.6
YBX3P16989 PRPF8-215ENST00000576958 416 ntTSL 216.77■□□□□ 0.281e-9■□□□□ 10.6
YBX3P16989 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.82■■□□□ 1.567e-10■□□□□ 10.6
YBX3P16989 CCNG1-210ENST00000511683 1071 ntTSL 213.28□□□□□ -0.287e-10■□□□□ 10.6
YBX3P16989 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC7.07□□□□□ -1.287e-10■□□□□ 10.6
YBX3P16989 C16orf58-205ENST00000565128 584 ntTSL 430.99■■■□□ 2.556e-6■□□□□ 10.6
YBX3P16989 BYSL-203ENST00000475702 670 ntTSL 230.63■■■□□ 2.493e-8■□□□□ 10.6
YBX3P16989 PIGS-213ENST00000583631 546 ntTSL 529.65■■■□□ 2.346e-6■□□□□ 10.6
YBX3P16989 C16orf58-203ENST00000541442 1056 ntTSL 227.44■■□□□ 1.986e-6■□□□□ 10.6
YBX3P16989 C16orf58-207ENST00000567578 636 ntTSL 427.44■■□□□ 1.986e-6■□□□□ 10.6
YBX3P16989 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.963e-8■□□□□ 10.6
YBX3P16989 LTBP4-206ENST00000546155 1285 ntTSL 226.44■■□□□ 1.826e-6■□□□□ 10.6
YBX3P16989 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC26.35■■□□□ 1.816e-6■□□□□ 10.6
YBX3P16989 RMDN3-206ENST00000558560 604 ntTSL 525.45■■□□□ 1.666e-6■□□□□ 10.6
YBX3P16989 HNRNPUL1-210ENST00000595806 1659 ntTSL 224.21■■□□□ 1.475e-14■□□□□ 10.6
YBX3P16989 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.94■■□□□ 1.426e-6■□□□□ 10.6
YBX3P16989 BTBD2-202ENST00000587225 1070 ntTSL 223.9■■□□□ 1.426e-6■□□□□ 10.6
YBX3P16989 CSNK1D-214ENST00000580565 566 ntTSL 423.8■■□□□ 1.46e-6■□□□□ 10.6
YBX3P16989 PSMD4-205ENST00000445776 703 ntTSL 323.79■■□□□ 1.42e-10■□□□□ 10.6
YBX3P16989 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.71■■□□□ 1.396e-6■□□□□ 10.6
YBX3P16989 LTBP4-223ENST00000598717 811 ntTSL 523.51■■□□□ 1.356e-6■□□□□ 10.6
YBX3P16989 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.01■■□□□ 1.276e-6■□□□□ 10.6
YBX3P16989 KLHL7-206ENST00000459661 592 ntTSL 522.89■■□□□ 1.256e-6■□□□□ 10.6
YBX3P16989 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.126e-6■□□□□ 10.6
YBX3P16989 PIGS-215ENST00000584413 577 ntTSL 421.69■■□□□ 1.066e-6■□□□□ 10.6
YBX3P16989 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.856e-6■□□□□ 10.6
YBX3P16989 LTBP4-222ENST00000598256 752 ntTSL 219.85■□□□□ 0.776e-6■□□□□ 10.6
YBX3P16989 PIGS-208ENST00000577594 481 ntTSL 219.73■□□□□ 0.756e-6■□□□□ 10.6
YBX3P16989 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.37■□□□□ 0.696e-6■□□□□ 10.6
YBX3P16989 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.696e-6■□□□□ 10.6
YBX3P16989 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.676e-6■□□□□ 10.6
YBX3P16989 KLHL7-210ENST00000479288 616 ntTSL 419.01■□□□□ 0.636e-6■□□□□ 10.6
YBX3P16989 SMARCA4-212ENST00000586985 534 ntTSL 518.67■□□□□ 0.583e-8■□□□□ 10.6
YBX3P16989 DARS-203ENST00000435076 717 ntTSL 218.57■□□□□ 0.563e-8■□□□□ 10.6
YBX3P16989 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC18.3■□□□□ 0.526e-6■□□□□ 10.6
YBX3P16989 SMG7-204ENST00000419169 2483 ntAPPRIS ALT2 TSL 217.69■□□□□ 0.426e-6■□□□□ 10.6
YBX3P16989 PDS5A-205ENST00000506262 559 ntTSL 317.64■□□□□ 0.416e-6■□□□□ 10.6
YBX3P16989 RMDN3-204ENST00000558232 1033 ntTSL 517.31■□□□□ 0.366e-6■□□□□ 10.6
YBX3P16989 RMDN3-210ENST00000560779 572 ntTSL 317.25■□□□□ 0.356e-6■□□□□ 10.6
YBX3P16989 C16orf58-206ENST00000566148 441 ntTSL 216.85■□□□□ 0.296e-6■□□□□ 10.6
YBX3P16989 C16orf58-204ENST00000564807 555 ntTSL 416.43■□□□□ 0.226e-6■□□□□ 10.6
YBX3P16989 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.143e-8■□□□□ 10.6
YBX3P16989 USP7-204ENST00000562051 567 ntTSL 414.15□□□□□ -0.143e-8■□□□□ 10.6
YBX3P16989 EIF2D-204ENST00000461334 411 ntTSL 213.47□□□□□ -0.256e-6■□□□□ 10.6
YBX3P16989 PRKACA-202ENST00000350356 3105 ntTSL 213.42□□□□□ -0.266e-6■□□□□ 10.6
YBX3P16989 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.336e-6■□□□□ 10.6
YBX3P16989 KLHL7-213ENST00000521082 3165 ntTSL 1 (best)12.73□□□□□ -0.376e-6■□□□□ 10.6
YBX3P16989 RBM19-204ENST00000546876 604 ntTSL 312.72□□□□□ -0.376e-6■□□□□ 10.6
YBX3P16989 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.386e-6■□□□□ 10.6
YBX3P16989 DARS-206ENST00000456565 731 ntTSL 312.65□□□□□ -0.383e-8■□□□□ 10.6
YBX3P16989 RMDN3-203ENST00000557831 954 ntTSL 212.45□□□□□ -0.426e-6■□□□□ 10.6
YBX3P16989 FAXDC2-213ENST00000522825 625 ntTSL 412.31□□□□□ -0.446e-6■□□□□ 10.6
YBX3P16989 RBM19-202ENST00000392561 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.456e-6■□□□□ 10.6
YBX3P16989 PDLIM5-209ENST00000506632 907 ntTSL 312.13□□□□□ -0.476e-6■□□□□ 10.6
YBX3P16989 VRK1-206ENST00000557222 1029 ntTSL 511.98□□□□□ -0.496e-6■□□□□ 10.6
YBX3P16989 FAXDC2-216ENST00000524363 584 ntTSL 311.88□□□□□ -0.516e-6■□□□□ 10.6
YBX3P16989 ZNF592-202ENST00000559607 3910 ntTSL 1 (best)11.27□□□□□ -0.613e-8■□□□□ 10.6
YBX3P16989 NOSTRIN-205ENST00000439509 584 ntTSL 311.1□□□□□ -0.636e-6■□□□□ 10.6
YBX3P16989 NOSTRIN-208ENST00000447264 794 ntTSL 511.1□□□□□ -0.636e-6■□□□□ 10.6
YBX3P16989 KIF1B-205ENST00000377093 7565 ntTSL 1 (best) BASIC10.73□□□□□ -0.696e-6■□□□□ 10.6
YBX3P16989 DARS-204ENST00000441323 651 ntTSL 310.65□□□□□ -0.73e-8■□□□□ 10.6
YBX3P16989 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.713e-8■□□□□ 10.6
YBX3P16989 ZNF592-203ENST00000560079 8131 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.753e-8■□□□□ 10.6
YBX3P16989 RBM19-203ENST00000545145 4422 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.86e-6■□□□□ 10.6
YBX3P16989 KLHL7-209ENST00000477076 482 ntTSL 29.81□□□□□ -0.846e-6■□□□□ 10.6
YBX3P16989 USP16-206ENST00000485067 2259 ntTSL 29.63□□□□□ -0.876e-6■□□□□ 10.6
YBX3P16989 FAXDC2-210ENST00000520581 868 ntTSL 49.6□□□□□ -0.876e-6■□□□□ 10.6
YBX3P16989 FAXDC2-212ENST00000521518 575 ntTSL 39.57□□□□□ -0.886e-6■□□□□ 10.6
YBX3P16989 DARS-205ENST00000449218 543 ntTSL 39.53□□□□□ -0.883e-8■□□□□ 10.6
YBX3P16989 ING3-206ENST00000497502 698 ntTSL 29.19□□□□□ -0.946e-6■□□□□ 10.6
YBX3P16989 PDLIM5-204ENST00000380176 3098 ntTSL 1 (best)8.47□□□□□ -1.056e-6■□□□□ 10.6
YBX3P16989 DARS-207ENST00000463008 412 ntTSL 57.96□□□□□ -1.143e-8■□□□□ 10.6
YBX3P16989 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC7.61□□□□□ -1.196e-6■□□□□ 10.6
YBX3P16989 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.39□□□□□ -1.236e-6■□□□□ 10.6
YBX3P16989 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.38□□□□□ -1.236e-6■□□□□ 10.6
YBX3P16989 USP7-220ENST00000569448 698 ntTSL 26.79□□□□□ -1.323e-8■□□□□ 10.6
YBX3P16989 USP7-213ENST00000566131 569 ntTSL 26.68□□□□□ -1.343e-8■□□□□ 10.6
YBX3P16989 SLC7A11-202ENST00000509248 797 ntTSL 56.5□□□□□ -1.376e-6■□□□□ 10.6
YBX3P16989 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.436e-6■□□□□ 10.6
YBX3P16989 KLHL7-211ENST00000479700 588 ntTSL 46.04□□□□□ -1.446e-6■□□□□ 10.6
YBX3P16989 ING3-203ENST00000427726 1718 ntTSL 1 (best)5.66□□□□□ -1.56e-6■□□□□ 10.6
YBX3P16989 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.546e-6■□□□□ 10.6
YBX3P16989 USP7-218ENST00000567692 313 ntTSL 54.44□□□□□ -1.73e-8■□□□□ 10.6
YBX3P16989 USP7-206ENST00000563043 332 ntTSL 54.3□□□□□ -1.723e-8■□□□□ 10.6
YBX3P16989 NOSTRIN-210ENST00000471833 553 ntTSL 33.22□□□□□ -1.896e-6■□□□□ 10.6
YBX3P16989 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14□□□□□ -0.172e-6■□□□□ 10.6
YBX3P16989 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.922e-6■□□□□ 10.6
YBX3P16989 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.63■□□□□ 0.413e-50■□□□□ 10.6
YBX3P16989 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC16.84■□□□□ 0.292e-7■□□□□ 10.6
YBX3P16989 MED27-201ENST00000292035 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.072e-7■□□□□ 10.6
YBX3P16989 GATA2-204ENST00000489987 1433 ntTSL 225.95■■□□□ 1.742e-10■□□□□ 10.6
YBX3P16989 ASAH1-257ENST00000637752 2708 nt8.56□□□□□ -1.042e-10■□□□□ 10.6
YBX3P16989 IDE-208ENST00000496903 1867 ntTSL 27.12□□□□□ -1.276e-6■□□□□ 10.6
YBX3P16989 MLLT10-206ENST00000420525 538 ntTSL 35.64□□□□□ -1.513e-8■□□□□ 10.6
YBX3P16989 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.29□□□□□ -1.726e-6■□□□□ 10.6
YBX3P16989 RBM18-201ENST00000417201 4974 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.878e-6■□□□□ 10.6
Retrieved 100 of 29,075 protein–RNA pairs in 315.1 ms