Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CSB-PGBD3P0DP91 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 AC006033.1-201ENST00000440505 426 ntBASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 KRT8P13-201ENST00000463294 1010 ntBASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 FAM86HP-204ENST00000513466 959 ntBASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSB-PGBD3P0DP91 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 AL607033.1-201ENST00000623900 1599 ntBASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 AC000095.1-201ENST00000603208 874 ntBASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSB-PGBD3P0DP91 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 AL022328.3-201ENST00000607943 679 ntBASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CSB-PGBD3P0DP91 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms