Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PRORSD1P-202ENST00000563365 2154 ntBASIC15.53■□□□□ 0.08
TNFP01375 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.53■□□□□ 0.08
TNFP01375 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.53■□□□□ 0.08
TNFP01375 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.53■□□□□ 0.08
TNFP01375 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.53■□□□□ 0.08
TNFP01375 RN7SL837P-201ENST00000463010 287 ntBASIC15.53■□□□□ 0.08
TNFP01375 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 HNRNPUP1-201ENST00000554987 333 ntBASIC15.53■□□□□ 0.08
TNFP01375 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.53■□□□□ 0.08
TNFP01375 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.53■□□□□ 0.08
TNFP01375 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TNFP01375 CDC14C-201ENST00000428251 1719 ntBASIC15.53■□□□□ 0.08
TNFP01375 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.53■□□□□ 0.08
TNFP01375 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TNFP01375 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
TNFP01375 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.52■□□□□ 0.08
TNFP01375 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TNFP01375 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.52■□□□□ 0.08
TNFP01375 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 GPR53P-205ENST00000457298 1084 ntBASIC15.52■□□□□ 0.08
TNFP01375 FAM86LP-201ENST00000478302 853 ntBASIC15.52■□□□□ 0.08
TNFP01375 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.52■□□□□ 0.08
TNFP01375 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.52■□□□□ 0.08
TNFP01375 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
TNFP01375 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.52■□□□□ 0.08
TNFP01375 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.52■□□□□ 0.08
TNFP01375 AL391069.4-201ENST00000609583 481 ntBASIC15.52■□□□□ 0.08
TNFP01375 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.52■□□□□ 0.08
TNFP01375 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.52■□□□□ 0.07
TNFP01375 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TNFP01375 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.07
TNFP01375 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.52■□□□□ 0.07
TNFP01375 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TNFP01375 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.52■□□□□ 0.07
TNFP01375 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.51■□□□□ 0.07
TNFP01375 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TNFP01375 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TNFP01375 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 AL596087.1-201ENST00000400979 1969 ntBASIC15.51■□□□□ 0.07
TNFP01375 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms