Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 TSEN15P1-201ENST00000423257 515 ntBASIC18.42■□□□□ 0.54
CTDNEP1O95476 TARDBPP1-201ENST00000442013 1203 ntBASIC18.42■□□□□ 0.54
CTDNEP1O95476 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 AL691403.2-201ENST00000618460 490 ntBASIC18.42■□□□□ 0.54
CTDNEP1O95476 Z92544.3-201ENST00000624747 417 ntBASIC18.42■□□□□ 0.54
CTDNEP1O95476 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTDNEP1O95476 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 SPDYE7P-202ENST00000420373 878 ntBASIC18.41■□□□□ 0.54
CTDNEP1O95476 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 AP001160.2-201ENST00000596071 487 ntBASIC18.41■□□□□ 0.54
CTDNEP1O95476 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 AC023157.3-201ENST00000619086 2088 ntBASIC18.41■□□□□ 0.54
CTDNEP1O95476 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 AC091951.1-201ENST00000512854 2465 ntBASIC18.41■□□□□ 0.54
CTDNEP1O95476 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.41■□□□□ 0.54
CTDNEP1O95476 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTDNEP1O95476 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 OR6D1P-203ENST00000641209 4860 ntBASIC18.4■□□□□ 0.54
CTDNEP1O95476 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.4■□□□□ 0.54
CTDNEP1O95476 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTDNEP1O95476 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms