Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
AP3B1O00203 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 KRT8P37-201ENST00000451609 1420 ntBASIC16.17■□□□□ 0.18
AP3B1O00203 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
AP3B1O00203 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
AP3B1O00203 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
AP3B1O00203 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.16■□□□□ 0.18
AP3B1O00203 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 AL022342.1-201ENST00000400363 863 ntBASIC16.16■□□□□ 0.18
AP3B1O00203 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.16■□□□□ 0.18
AP3B1O00203 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.16■□□□□ 0.18
AP3B1O00203 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.16■□□□□ 0.18
AP3B1O00203 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
AP3B1O00203 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.16■□□□□ 0.18
AP3B1O00203 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.16■□□□□ 0.18
AP3B1O00203 CYP4F24P-201ENST00000586049 1580 ntBASIC16.16■□□□□ 0.18
AP3B1O00203 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
AP3B1O00203 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.16■□□□□ 0.18
AP3B1O00203 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
AP3B1O00203 ELL2P1-201ENST00000413990 1906 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 AC092850.2-201ENST00000623821 2697 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
AP3B1O00203 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.15■□□□□ 0.18
AP3B1O00203 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.15■□□□□ 0.18
AP3B1O00203 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.15■□□□□ 0.18
AP3B1O00203 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 AC005829.1-201ENST00000570002 483 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.15■□□□□ 0.18
AP3B1O00203 AP3S2-216ENST00000617003 1561 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 SSR4P1-203ENST00000599569 2260 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP3B1O00203 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.15■□□□□ 0.18
AP3B1O00203 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.15■□□□□ 0.18
AP3B1O00203 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.14■□□□□ 0.18
AP3B1O00203 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP3B1O00203 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.14■□□□□ 0.17
AP3B1O00203 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP3B1O00203 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
AP3B1O00203 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP3B1O00203 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP3B1O00203 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP3B1O00203 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms