Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 AL592293.1-201ENST00000502889 1188 ntBASIC18.94■□□□□ 0.62
FOXA2Q9Y261 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.93■□□□□ 0.62
FOXA2Q9Y261 MIR6089-201ENST00000616698 64 ntBASIC18.93■□□□□ 0.62
FOXA2Q9Y261 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA2Q9Y261 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.91■□□□□ 0.62
FOXA2Q9Y261 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 KRT18P60-201ENST00000312876 1297 ntBASIC18.9■□□□□ 0.62
FOXA2Q9Y261 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA2Q9Y261 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
FOXA2Q9Y261 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA2Q9Y261 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 AC018755.3-202ENST00000596210 929 ntBASIC18.88■□□□□ 0.61
FOXA2Q9Y261 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA2Q9Y261 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
FOXA2Q9Y261 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 KRT18P10-201ENST00000388836 1287 ntBASIC18.86■□□□□ 0.61
FOXA2Q9Y261 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA2Q9Y261 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 AC129492.7-201ENST00000622992 756 ntBASIC18.85■□□□□ 0.61
FOXA2Q9Y261 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA2Q9Y261 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA2Q9Y261 DUX4L9-201ENST00000449051 1259 ntBASIC18.84■□□□□ 0.61
FOXA2Q9Y261 MIR6765-201ENST00000614092 87 ntBASIC18.84■□□□□ 0.61
FOXA2Q9Y261 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms