Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AF131216.4-201ENST00000638924 1588 ntBASIC23.01■■□□□ 1.27
LMX1AQ8TE12 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 MIR6724-1-201ENST00000616420 92 ntBASIC23.01■■□□□ 1.27
LMX1AQ8TE12 MIR6724-2-201ENST00000616483 92 ntBASIC23.01■■□□□ 1.27
LMX1AQ8TE12 MIR6724-4-201ENST00000617390 92 ntBASIC23.01■■□□□ 1.27
LMX1AQ8TE12 MIR6724-3-201ENST00000622482 92 ntBASIC23.01■■□□□ 1.27
LMX1AQ8TE12 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LMX1AQ8TE12 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
LMX1AQ8TE12 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
LMX1AQ8TE12 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23■■□□□ 1.27
LMX1AQ8TE12 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23■■□□□ 1.27
LMX1AQ8TE12 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23■■□□□ 1.27
LMX1AQ8TE12 AL117332.1-201ENST00000622628 974 ntBASIC23■■□□□ 1.27
LMX1AQ8TE12 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23■■□□□ 1.27
LMX1AQ8TE12 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 AC090877.2-201ENST00000558441 1738 ntBASIC22.99■■□□□ 1.27
LMX1AQ8TE12 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LMX1AQ8TE12 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 AC131281.2-201ENST00000520478 145 ntBASIC22.98■■□□□ 1.27
LMX1AQ8TE12 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.98■■□□□ 1.27
LMX1AQ8TE12 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.98■■□□□ 1.27
LMX1AQ8TE12 AC010501.1-201ENST00000606270 1962 ntBASIC22.98■■□□□ 1.27
LMX1AQ8TE12 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LMX1AQ8TE12 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LMX1AQ8TE12 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
LMX1AQ8TE12 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LMX1AQ8TE12 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.96■■□□□ 1.27
LMX1AQ8TE12 AL356740.2-201ENST00000601559 647 ntBASIC22.96■■□□□ 1.27
LMX1AQ8TE12 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.95■■□□□ 1.26
LMX1AQ8TE12 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.95■■□□□ 1.26
LMX1AQ8TE12 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.95■■□□□ 1.26
LMX1AQ8TE12 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
LMX1AQ8TE12 MIR3621-201ENST00000580529 85 ntBASIC22.95■■□□□ 1.26
LMX1AQ8TE12 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.95■■□□□ 1.26
LMX1AQ8TE12 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 AL136116.3-201ENST00000402907 1138 ntBASIC22.94■■□□□ 1.26
LMX1AQ8TE12 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LMX1AQ8TE12 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
LMX1AQ8TE12 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LMX1AQ8TE12 AL121749.1-202ENST00000609313 2153 ntBASIC22.91■■□□□ 1.26
LMX1AQ8TE12 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.91■■□□□ 1.26
LMX1AQ8TE12 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms