Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 SLC6A10P-202ENST00000431994 2058 ntBASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.64■■□□□ 1.06
DEPDC4Q8N2C3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
DEPDC4Q8N2C3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DEPDC4Q8N2C3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
DEPDC4Q8N2C3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.64■■□□□ 1.05
DEPDC4Q8N2C3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DEPDC4Q8N2C3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
DEPDC4Q8N2C3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DEPDC4Q8N2C3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DEPDC4Q8N2C3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DEPDC4Q8N2C3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DEPDC4Q8N2C3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.61■■□□□ 1.05
DEPDC4Q8N2C3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
DEPDC4Q8N2C3 ECEL1P2-201ENST00000461596 1295 ntBASIC21.61■■□□□ 1.05
DEPDC4Q8N2C3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DEPDC4Q8N2C3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DEPDC4Q8N2C3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 AL359504.2-201ENST00000605506 1601 ntBASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.6■■□□□ 1.05
DEPDC4Q8N2C3 DUSP8P5-201ENST00000422884 1815 ntBASIC21.59■■□□□ 1.05
DEPDC4Q8N2C3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DEPDC4Q8N2C3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DEPDC4Q8N2C3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
DEPDC4Q8N2C3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DEPDC4Q8N2C3 AC092296.2-201ENST00000589470 999 ntBASIC21.58■■□□□ 1.05
DEPDC4Q8N2C3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
DEPDC4Q8N2C3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
DEPDC4Q8N2C3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
DEPDC4Q8N2C3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 AL359258.2-201ENST00000564063 1566 ntBASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.57■■□□□ 1.04
DEPDC4Q8N2C3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 AC079834.2-201ENST00000609776 1949 ntBASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DEPDC4Q8N2C3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DEPDC4Q8N2C3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 NTF6A-201ENST00000591175 560 ntBASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DEPDC4Q8N2C3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
DEPDC4Q8N2C3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DEPDC4Q8N2C3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DEPDC4Q8N2C3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DEPDC4Q8N2C3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DEPDC4Q8N2C3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms