Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM1Q2M3G4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC27.71■■■□□ 2.03
SHROOM1Q2M3G4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.71■■■□□ 2.03
SHROOM1Q2M3G4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC27.71■■■□□ 2.03
SHROOM1Q2M3G4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
SHROOM1Q2M3G4 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM1Q2M3G4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
SHROOM1Q2M3G4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHROOM1Q2M3G4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.7■■■□□ 2.02
SHROOM1Q2M3G4 AC010997.5-201ENST00000609182 354 ntBASIC27.7■■■□□ 2.02
SHROOM1Q2M3G4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 AL117332.1-201ENST00000622628 974 ntBASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM1Q2M3G4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 AC010501.1-201ENST00000606270 1962 ntBASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM1Q2M3G4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 AC097639.1-201ENST00000565519 1891 ntBASIC27.67■■■□□ 2.02
SHROOM1Q2M3G4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHROOM1Q2M3G4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
SHROOM1Q2M3G4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHROOM1Q2M3G4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.64■■■□□ 2.02
SHROOM1Q2M3G4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.64■■■□□ 2.02
SHROOM1Q2M3G4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.64■■■□□ 2.01
SHROOM1Q2M3G4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 MTDHP2-201ENST00000601468 714 ntBASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM1Q2M3G4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 AC092803.2-201ENST00000564287 1899 ntBASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM1Q2M3G4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 MIR3621-201ENST00000580529 85 ntBASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 MIR4466-201ENST00000606121 54 ntBASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 AC090877.2-201ENST00000558441 1738 ntBASIC27.61■■■□□ 2.01
SHROOM1Q2M3G4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 MIR6724-1-201ENST00000616420 92 ntBASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 MIR6724-2-201ENST00000616483 92 ntBASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 MIR6724-4-201ENST00000617390 92 ntBASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 MIR6724-3-201ENST00000622482 92 ntBASIC27.6■■■□□ 2.01
SHROOM1Q2M3G4 RASSF1-AS1-201ENST00000629828 790 ntBASIC27.6■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms