Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
LMO4P61968 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.49■□□□□ 0.71
LMO4P61968 AC010997.5-201ENST00000609182 354 ntBASIC19.49■□□□□ 0.71
LMO4P61968 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.49■□□□□ 0.71
LMO4P61968 AC092803.2-201ENST00000564287 1899 ntBASIC19.49■□□□□ 0.71
LMO4P61968 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LMO4P61968 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMO4P61968 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LMO4P61968 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMO4P61968 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.48■□□□□ 0.71
LMO4P61968 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMO4P61968 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMO4P61968 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMO4P61968 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LMO4P61968 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMO4P61968 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMO4P61968 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LMO4P61968 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMO4P61968 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMO4P61968 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.46■□□□□ 0.71
LMO4P61968 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.46■□□□□ 0.71
LMO4P61968 MTDHP2-201ENST00000601468 714 ntBASIC19.46■□□□□ 0.71
LMO4P61968 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.46■□□□□ 0.71
LMO4P61968 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMO4P61968 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LMO4P61968 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.45■□□□□ 0.7
LMO4P61968 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.45■□□□□ 0.7
LMO4P61968 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.45■□□□□ 0.7
LMO4P61968 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.45■□□□□ 0.7
LMO4P61968 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.45■□□□□ 0.7
LMO4P61968 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.45■□□□□ 0.7
LMO4P61968 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.45■□□□□ 0.7
LMO4P61968 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.45■□□□□ 0.7
LMO4P61968 MIR6724-1-201ENST00000616420 92 ntBASIC19.45■□□□□ 0.7
LMO4P61968 MIR6724-2-201ENST00000616483 92 ntBASIC19.45■□□□□ 0.7
LMO4P61968 MIR6724-4-201ENST00000617390 92 ntBASIC19.45■□□□□ 0.7
LMO4P61968 MIR6724-3-201ENST00000622482 92 ntBASIC19.45■□□□□ 0.7
LMO4P61968 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LMO4P61968 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LMO4P61968 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMO4P61968 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LMO4P61968 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LMO4P61968 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LMO4P61968 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.44■□□□□ 0.7
LMO4P61968 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMO4P61968 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.44■□□□□ 0.7
LMO4P61968 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.44■□□□□ 0.7
LMO4P61968 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.44■□□□□ 0.7
LMO4P61968 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LMO4P61968 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMO4P61968 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
LMO4P61968 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMO4P61968 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.43■□□□□ 0.7
LMO4P61968 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.43■□□□□ 0.7
LMO4P61968 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMO4P61968 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMO4P61968 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LMO4P61968 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.42■□□□□ 0.7
LMO4P61968 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMO4P61968 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LMO4P61968 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.42■□□□□ 0.7
LMO4P61968 AL117332.1-201ENST00000622628 974 ntBASIC19.42■□□□□ 0.7
LMO4P61968 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LMO4P61968 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.41■□□□□ 0.7
LMO4P61968 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.41■□□□□ 0.7
LMO4P61968 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.41■□□□□ 0.7
LMO4P61968 MIR3621-201ENST00000580529 85 ntBASIC19.41■□□□□ 0.7
LMO4P61968 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMO4P61968 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LMO4P61968 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.4■□□□□ 0.7
LMO4P61968 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.4■□□□□ 0.7
LMO4P61968 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMO4P61968 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.4■□□□□ 0.7
LMO4P61968 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LMO4P61968 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.39■□□□□ 0.7
LMO4P61968 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.39■□□□□ 0.69
LMO4P61968 AC131281.2-201ENST00000520478 145 ntBASIC19.39■□□□□ 0.69
LMO4P61968 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.39■□□□□ 0.69
LMO4P61968 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LMO4P61968 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMO4P61968 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMO4P61968 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LMO4P61968 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LMO4P61968 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
LMO4P61968 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.38■□□□□ 0.69
LMO4P61968 AC019069.1-201ENST00000610008 1333 ntBASIC19.38■□□□□ 0.69
LMO4P61968 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LMO4P61968 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.38■□□□□ 0.69
LMO4P61968 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.37■□□□□ 0.69
LMO4P61968 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMO4P61968 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.37■□□□□ 0.69
LMO4P61968 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LMO4P61968 AL356740.2-201ENST00000601559 647 ntBASIC19.37■□□□□ 0.69
LMO4P61968 SNX5-217ENST00000606557 1087 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms