Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
CXCL12P48061 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
CXCL12P48061 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.7■■□□□ 1.38
CXCL12P48061 AC024257.2-201ENST00000549699 147 ntBASIC23.7■■□□□ 1.38
CXCL12P48061 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.7■■□□□ 1.38
CXCL12P48061 FOXO3B-201ENST00000395675 1928 ntBASIC23.7■■□□□ 1.38
CXCL12P48061 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CXCL12P48061 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CXCL12P48061 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CXCL12P48061 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CXCL12P48061 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
CXCL12P48061 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
CXCL12P48061 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.69■■□□□ 1.38
CXCL12P48061 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.69■■□□□ 1.38
CXCL12P48061 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CXCL12P48061 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CXCL12P48061 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.68■■□□□ 1.38
CXCL12P48061 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CXCL12P48061 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CXCL12P48061 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CXCL12P48061 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.68■■□□□ 1.38
CXCL12P48061 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CXCL12P48061 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
CXCL12P48061 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CXCL12P48061 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CXCL12P48061 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.68■■□□□ 1.38
CXCL12P48061 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
CXCL12P48061 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CXCL12P48061 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CXCL12P48061 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CXCL12P48061 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
CXCL12P48061 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
CXCL12P48061 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CXCL12P48061 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
CXCL12P48061 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
CXCL12P48061 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.66■■□□□ 1.38
CXCL12P48061 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 AC105265.2-201ENST00000467189 838 ntBASIC23.65■■□□□ 1.38
CXCL12P48061 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CXCL12P48061 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CXCL12P48061 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.64■■□□□ 1.38
CXCL12P48061 AC139426.1-201ENST00000568218 2529 ntBASIC23.64■■□□□ 1.38
CXCL12P48061 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
CXCL12P48061 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CXCL12P48061 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.64■■□□□ 1.37
CXCL12P48061 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.64■■□□□ 1.37
CXCL12P48061 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CXCL12P48061 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CXCL12P48061 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CXCL12P48061 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CXCL12P48061 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.63■■□□□ 1.37
CXCL12P48061 AC090877.2-201ENST00000558441 1738 ntBASIC23.63■■□□□ 1.37
CXCL12P48061 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CXCL12P48061 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CXCL12P48061 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CXCL12P48061 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.62■■□□□ 1.37
CXCL12P48061 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.62■■□□□ 1.37
CXCL12P48061 AL136967.2-201ENST00000623968 743 ntBASIC23.62■■□□□ 1.37
CXCL12P48061 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.62■■□□□ 1.37
CXCL12P48061 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.61■■□□□ 1.37
CXCL12P48061 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.61■■□□□ 1.37
CXCL12P48061 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.61■■□□□ 1.37
CXCL12P48061 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
CXCL12P48061 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CXCL12P48061 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
CXCL12P48061 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.6■■□□□ 1.37
CXCL12P48061 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CXCL12P48061 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CXCL12P48061 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CXCL12P48061 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.6■■□□□ 1.37
CXCL12P48061 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.6■■□□□ 1.37
CXCL12P48061 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.6■■□□□ 1.37
CXCL12P48061 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CXCL12P48061 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CXCL12P48061 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CXCL12P48061 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.59■■□□□ 1.37
CXCL12P48061 DUX4L19-201ENST00000557448 1267 ntBASIC23.59■■□□□ 1.37
CXCL12P48061 AF213884.3-201ENST00000563833 479 ntBASIC23.59■■□□□ 1.37
CXCL12P48061 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
CXCL12P48061 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CXCL12P48061 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CXCL12P48061 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.59■■□□□ 1.37
CXCL12P48061 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.59■■□□□ 1.37
CXCL12P48061 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms