Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA3O43365 AC135731.1-201ENST00000569415 2548 ntBASIC18.87■□□□□ 0.61
HOXA3O43365 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXA3O43365 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA3O43365 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA3O43365 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXA3O43365 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXA3O43365 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA3O43365 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA3O43365 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HOXA3O43365 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXA3O43365 AC131281.2-201ENST00000520478 145 ntBASIC18.86■□□□□ 0.61
HOXA3O43365 MIR6724-1-201ENST00000616420 92 ntBASIC18.86■□□□□ 0.61
HOXA3O43365 MIR6724-2-201ENST00000616483 92 ntBASIC18.86■□□□□ 0.61
HOXA3O43365 MIR6724-4-201ENST00000617390 92 ntBASIC18.86■□□□□ 0.61
HOXA3O43365 MIR6724-3-201ENST00000622482 92 ntBASIC18.86■□□□□ 0.61
HOXA3O43365 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA3O43365 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA3O43365 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXA3O43365 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA3O43365 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA3O43365 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA3O43365 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HOXA3O43365 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA3O43365 AL117332.1-201ENST00000622628 974 ntBASIC18.85■□□□□ 0.61
HOXA3O43365 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA3O43365 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA3O43365 PKM-203ENST00000389093 2279 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA3O43365 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA3O43365 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXA3O43365 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXA3O43365 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXA3O43365 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXA3O43365 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXA3O43365 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXA3O43365 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HOXA3O43365 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXA3O43365 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXA3O43365 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXA3O43365 AL136116.3-201ENST00000402907 1138 ntBASIC18.83■□□□□ 0.6
HOXA3O43365 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXA3O43365 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXA3O43365 AF131216.4-201ENST00000638924 1588 ntBASIC18.83■□□□□ 0.6
HOXA3O43365 ERN1-208ENST00000606895 2068 ntBASIC18.83■□□□□ 0.6
HOXA3O43365 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXA3O43365 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXA3O43365 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
HOXA3O43365 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXA3O43365 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.82■□□□□ 0.6
HOXA3O43365 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HOXA3O43365 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXA3O43365 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HOXA3O43365 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXA3O43365 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXA3O43365 AL356740.2-201ENST00000601559 647 ntBASIC18.82■□□□□ 0.6
HOXA3O43365 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HOXA3O43365 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXA3O43365 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXA3O43365 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.81■□□□□ 0.6
HOXA3O43365 MIR3621-201ENST00000580529 85 ntBASIC18.81■□□□□ 0.6
HOXA3O43365 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXA3O43365 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXA3O43365 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
HOXA3O43365 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXA3O43365 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXA3O43365 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXA3O43365 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXA3O43365 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXA3O43365 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXA3O43365 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 AC096887.2-201ENST00000623443 1957 ntBASIC18.8■□□□□ 0.6
HOXA3O43365 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXA3O43365 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXA3O43365 AC097639.1-201ENST00000565519 1891 ntBASIC18.8■□□□□ 0.6
HOXA3O43365 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXA3O43365 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXA3O43365 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXA3O43365 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HOXA3O43365 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms