Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
AP1S3Q96PC3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC21.69■■□□□ 1.06
AP1S3Q96PC3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP1S3Q96PC3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC21.68■■□□□ 1.06
AP1S3Q96PC3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
AP1S3Q96PC3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
AP1S3Q96PC3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
AP1S3Q96PC3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP1S3Q96PC3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
AP1S3Q96PC3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
AP1S3Q96PC3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
AP1S3Q96PC3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
AP1S3Q96PC3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP1S3Q96PC3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP1S3Q96PC3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP1S3Q96PC3 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
AP1S3Q96PC3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP1S3Q96PC3 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP1S3Q96PC3 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC21.49■■□□□ 1.03
AP1S3Q96PC3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
AP1S3Q96PC3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC21.46■■□□□ 1.03
AP1S3Q96PC3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
AP1S3Q96PC3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
AP1S3Q96PC3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
AP1S3Q96PC3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.38■■□□□ 1.01
AP1S3Q96PC3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
AP1S3Q96PC3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
AP1S3Q96PC3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.36■■□□□ 1.01
AP1S3Q96PC3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.36■■□□□ 1.01
AP1S3Q96PC3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
AP1S3Q96PC3 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
AP1S3Q96PC3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
AP1S3Q96PC3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC21.35■■□□□ 1.01
AP1S3Q96PC3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
AP1S3Q96PC3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC21.34■■□□□ 1.01
AP1S3Q96PC3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
AP1S3Q96PC3 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC21.33■■□□□ 1
AP1S3Q96PC3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
AP1S3Q96PC3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
AP1S3Q96PC3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP1S3Q96PC3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC21.29■■□□□ 1
AP1S3Q96PC3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
AP1S3Q96PC3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
AP1S3Q96PC3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
AP1S3Q96PC3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP1S3Q96PC3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
AP1S3Q96PC3 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC21.2■□□□□ 0.98
AP1S3Q96PC3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
AP1S3Q96PC3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.18■□□□□ 0.98
AP1S3Q96PC3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
AP1S3Q96PC3 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC21.17■□□□□ 0.98
AP1S3Q96PC3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.16■□□□□ 0.98
AP1S3Q96PC3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
AP1S3Q96PC3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.13■□□□□ 0.97
AP1S3Q96PC3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
AP1S3Q96PC3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP1S3Q96PC3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.1■□□□□ 0.97
AP1S3Q96PC3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP1S3Q96PC3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
AP1S3Q96PC3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP1S3Q96PC3 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP1S3Q96PC3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
AP1S3Q96PC3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
AP1S3Q96PC3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
AP1S3Q96PC3 AL161658.1-201ENST00000623641 1967 ntBASIC21.05■□□□□ 0.96
AP1S3Q96PC3 AC145285.7-201ENST00000614819 1539 ntBASIC21.04■□□□□ 0.96
AP1S3Q96PC3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
AP1S3Q96PC3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
AP1S3Q96PC3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
AP1S3Q96PC3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
AP1S3Q96PC3 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC21■□□□□ 0.95
AP1S3Q96PC3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
AP1S3Q96PC3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
AP1S3Q96PC3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
AP1S3Q96PC3 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP1S3Q96PC3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP1S3Q96PC3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
AP1S3Q96PC3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
AP1S3Q96PC3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP1S3Q96PC3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP1S3Q96PC3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP1S3Q96PC3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP1S3Q96PC3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
AP1S3Q96PC3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.93■□□□□ 0.94
AP1S3Q96PC3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC20.92■□□□□ 0.94
AP1S3Q96PC3 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP1S3Q96PC3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP1S3Q96PC3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
AP1S3Q96PC3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC20.89■□□□□ 0.93
AP1S3Q96PC3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP1S3Q96PC3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
AP1S3Q96PC3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP1S3Q96PC3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
AP1S3Q96PC3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
AP1S3Q96PC3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms