Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC244669.2-201ENST00000612320 853 ntBASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHROOM4Q9ULL8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 CNN2P8-201ENST00000421872 913 ntBASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AC004898.1-201ENST00000451057 766 ntBASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AC243562.2-201ENST00000561247 970 ntBASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AC120045.2-201ENST00000567334 178 ntBASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 HARS-202ENST00000415192 1401 ntTSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHROOM4Q9ULL8 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 MGST3-203ENST00000367885 680 ntTSL 2 BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 AC007969.1-201ENST00000433675 447 ntBASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 AC016694.1-201ENST00000434179 700 ntBASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
SHROOM4Q9ULL8 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 ZBTB45P2-201ENST00000452245 1531 ntBASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHROOM4Q9ULL8 RPS3-201ENST00000278572 907 ntTSL 3 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 Z93015.1-201ENST00000451718 390 ntBASIC30■■■□□ 2.39
SHROOM4Q9ULL8 FAM86LP-201ENST00000478302 853 ntBASIC30■■■□□ 2.39
SHROOM4Q9ULL8 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC30■■■□□ 2.39
SHROOM4Q9ULL8 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 BX284668.4-201ENST00000453917 508 ntBASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 RPL13AP25-201ENST00000484130 612 ntBASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 CLUHP6-201ENST00000580789 941 ntBASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHROOM4Q9ULL8 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms