Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 KRT8P37-201ENST00000451609 1420 ntBASIC14.68□□□□□ -0.06
LRFN1Q9P244 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 MEP1AP4-201ENST00000423244 1087 ntBASIC14.68□□□□□ -0.06
LRFN1Q9P244 HIST3H2BA-201ENST00000436555 524 ntBASIC14.68□□□□□ -0.06
LRFN1Q9P244 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 CR383656.12-201ENST00000549567 513 ntBASIC14.68□□□□□ -0.06
LRFN1Q9P244 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 AC004790.1-201ENST00000612686 536 ntBASIC14.68□□□□□ -0.06
LRFN1Q9P244 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.68□□□□□ -0.06
LRFN1Q9P244 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LRFN1Q9P244 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 NME2P1-201ENST00000426182 414 ntBASIC14.67□□□□□ -0.06
LRFN1Q9P244 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 AC055876.2-201ENST00000531834 546 ntBASIC14.67□□□□□ -0.06
LRFN1Q9P244 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
LRFN1Q9P244 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LRFN1Q9P244 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.66□□□□□ -0.06
LRFN1Q9P244 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LRFN1Q9P244 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.66□□□□□ -0.06
LRFN1Q9P244 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LRFN1Q9P244 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LRFN1Q9P244 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LRFN1Q9P244 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.66□□□□□ -0.06
LRFN1Q9P244 AC018695.7-201ENST00000624587 2492 ntBASIC14.66□□□□□ -0.06
LRFN1Q9P244 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.66□□□□□ -0.06
LRFN1Q9P244 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms