Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VMP1Q96GC9 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VMP1Q96GC9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VMP1Q96GC9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VMP1Q96GC9 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AL627223.1-201ENST00000416693 442 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 SPCS2P4-201ENST00000436160 681 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AC027612.4-201ENST00000605371 583 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 AC020765.3-201ENST00000613051 740 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 AC008267.7-201ENST00000624570 1194 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 AL512652.2-201ENST00000625156 1716 ntBASIC15.4■□□□□ 0.06
VMP1Q96GC9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VMP1Q96GC9 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.4■□□□□ 0.06
VMP1Q96GC9 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.39■□□□□ 0.05
VMP1Q96GC9 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AL365209.1-201ENST00000624418 6473 ntBASIC15.39■□□□□ 0.05
VMP1Q96GC9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AC027307.2-201ENST00000591252 911 ntBASIC15.39■□□□□ 0.05
VMP1Q96GC9 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 HLA-A-202ENST00000376806 1854 ntBASIC15.39■□□□□ 0.05
VMP1Q96GC9 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VMP1Q96GC9 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms