Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 BCRP2-202ENST00000447763 634 ntBASIC16.18■□□□□ 0.18
CHFRQ96EP1 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 BCRP6-201ENST00000510112 632 ntBASIC16.18■□□□□ 0.18
CHFRQ96EP1 BCRP7-201ENST00000511549 544 ntBASIC16.18■□□□□ 0.18
CHFRQ96EP1 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 MIR4525-201ENST00000580000 75 ntBASIC16.18■□□□□ 0.18
CHFRQ96EP1 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CHFRQ96EP1 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHFRQ96EP1 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 REXO1L1P-202ENST00000608646 1974 ntBASIC16.17■□□□□ 0.18
CHFRQ96EP1 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 PHKG1P2-201ENST00000457537 863 ntBASIC16.17■□□□□ 0.18
CHFRQ96EP1 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 SLED1-202ENST00000512051 380 ntBASIC16.17■□□□□ 0.18
CHFRQ96EP1 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AL606495.2-201ENST00000605867 535 ntBASIC16.17■□□□□ 0.18
CHFRQ96EP1 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHFRQ96EP1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
CHFRQ96EP1 AGGF1P2-201ENST00000426656 2106 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 NKILA-202ENST00000614771 2598 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms