Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AP001582.1-201ENST00000525856 295 ntBASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AC135983.4-201ENST00000564116 1262 ntBASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC004987.2-201ENST00000395959 1148 ntBASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 EEF1DP4-201ENST00000446006 880 ntBASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 RN7SL8P-201ENST00000461771 266 ntBASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AP005019.2-201ENST00000615104 511 ntBASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMC1BQ8NDV3 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 AC116353.5-201ENST00000638148 1699 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 AC079178.1-201ENST00000420915 656 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 CNN2P10-201ENST00000443067 918 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 AC026410.3-201ENST00000514280 936 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 AC009084.3-201ENST00000623356 437 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 AC100757.4-201ENST00000626934 759 ntBASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMC1BQ8NDV3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.77■□□□□ 0.59
SMC1BQ8NDV3 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms