Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.89□□□□□ -0.03
BEST3Q8N1M1 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 AC044860.1-202ENST00000559481 777 ntBASIC14.88□□□□□ -0.03
BEST3Q8N1M1 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BEST3Q8N1M1 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AC026691.1-201ENST00000602502 2017 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SPDYE17-201ENST00000412399 783 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AC012645.4-201ENST00000610691 1061 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms