Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AL023775.1-201ENST00000454907 1746 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 NCK2-206ENST00000522586 490 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC009486.1-201ENST00000569860 813 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC148477.4-201ENST00000613430 1793 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 RN7SL11P-201ENST00000471305 293 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC011491.1-203ENST00000637688 543 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 KRT8P35-201ENST00000483942 1338 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 LTB4R2-202ENST00000528054 3092 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AL139384.1-201ENST00000612143 3047 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 MSRA-203ENST00000441698 788 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 AC022748.3-201ENST00000621828 275 ntBASIC10.91□□□□□ -0.66
CSMD3Q7Z407 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC10.91□□□□□ -0.66
CSMD3Q7Z407 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AC008132.1-202ENST00000342005 1389 ntBASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 MAGEA5-201ENST00000446757 942 ntBASIC10.9□□□□□ -0.66
CSMD3Q7Z407 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 MIR6756-201ENST00000616240 63 ntBASIC10.9□□□□□ -0.66
CSMD3Q7Z407 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 NOC2LP2-201ENST00000407594 1944 ntBASIC10.9□□□□□ -0.66
CSMD3Q7Z407 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AC008267.1-201ENST00000474858 1069 ntBASIC10.9□□□□□ -0.66
CSMD3Q7Z407 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms