Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 BCL2-203ENST00000589955 5011 ntBASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM1Q2M3G4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AL162726.2-201ENST00000438986 1017 ntBASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AC104989.1-201ENST00000519711 778 ntBASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AP001889.1-201ENST00000525414 633 ntBASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 AC133552.6-201ENST00000613406 534 ntBASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM1Q2M3G4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC099336.1-201ENST00000417053 1171 ntBASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC134915.1-201ENST00000426461 574 ntBASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC106760.1-201ENST00000508690 800 ntBASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 MIR4313-201ENST00000580760 101 ntBASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM1Q2M3G4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHROOM1Q2M3G4 AC092658.1-201ENST00000505836 891 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms