Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 AC098831.1-202ENST00000438821 336 ntBASIC12.34□□□□□ -0.43
HIST1H1AQ02539 FAM185BP-201ENST00000443595 716 ntBASIC12.34□□□□□ -0.43
HIST1H1AQ02539 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 ACTL9-202ENST00000612068 1252 ntBASIC12.34□□□□□ -0.43
HIST1H1AQ02539 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 AL122018.1-201ENST00000446607 2310 ntBASIC12.34□□□□□ -0.43
HIST1H1AQ02539 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 AC073347.1-201ENST00000421633 2643 ntBASIC12.34□□□□□ -0.43
HIST1H1AQ02539 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.34□□□□□ -0.43
HIST1H1AQ02539 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HIST1H1AQ02539 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HIST1H1AQ02539 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
HIST1H1AQ02539 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AP005117.1-202ENST00000581724 1908 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 PRSS29P-201ENST00000440800 595 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AP002469.2-201ENST00000531724 424 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 OR7E47P-204ENST00000575924 449 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AL049840.3-201ENST00000602669 611 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AL031055.1-201ENST00000606362 631 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AC021097.1-201ENST00000607902 574 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 MIR7706-201ENST00000613747 67 ntBASIC12.33□□□□□ -0.44
HIST1H1AQ02539 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HIST1H1AQ02539 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HIST1H1AQ02539 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms