Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 HLA-A-202ENST00000376806 1854 ntBASIC13.74□□□□□ -0.21
ABCA4P78363 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA4P78363 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 AL162726.2-201ENST00000438986 1017 ntBASIC13.74□□□□□ -0.21
ABCA4P78363 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 LETM1P2-201ENST00000597330 2178 ntBASIC13.74□□□□□ -0.21
ABCA4P78363 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA4P78363 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 RPL13AP25-201ENST00000484130 612 ntBASIC13.74□□□□□ -0.21
ABCA4P78363 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA4P78363 AC233724.13-201ENST00000598383 410 ntBASIC13.74□□□□□ -0.21
ABCA4P78363 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA4P78363 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
ABCA4P78363 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA4P78363 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
ABCA4P78363 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 AC006538.1-201ENST00000567905 1585 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 MIR1247-201ENST00000408206 136 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 CSF2RBP1-201ENST00000447905 391 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 FO681548.1-201ENST00000455617 1132 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.73□□□□□ -0.21
ABCA4P78363 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.73□□□□□ -0.21
ABCA4P78363 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.73□□□□□ -0.21
ABCA4P78363 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.73□□□□□ -0.21
ABCA4P78363 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.73□□□□□ -0.21
ABCA4P78363 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA4P78363 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA4P78363 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
ABCA4P78363 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA4P78363 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
ABCA4P78363 AC099336.1-201ENST00000417053 1171 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.73□□□□□ -0.21
ABCA4P78363 BCRP2-202ENST00000447763 634 ntBASIC13.73□□□□□ -0.21
ABCA4P78363 BCRP6-201ENST00000510112 632 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms