Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 CICP20-201ENST00000443330 2801 ntBASIC14.4□□□□□ -0.1
VBP1P61758 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.4□□□□□ -0.1
VBP1P61758 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.4□□□□□ -0.1
VBP1P61758 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
VBP1P61758 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 SNX21-213ENST00000614929 587 ntTSL 5 BASIC14.4□□□□□ -0.1
VBP1P61758 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 AL031432.5-201ENST00000641059 760 ntBASIC14.4□□□□□ -0.1
VBP1P61758 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VBP1P61758 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VBP1P61758 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 AC126365.1-201ENST00000578585 1514 ntBASIC14.4□□□□□ -0.1
VBP1P61758 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.4□□□□□ -0.1
VBP1P61758 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VBP1P61758 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.11
VBP1P61758 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.39□□□□□ -0.11
VBP1P61758 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
VBP1P61758 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
VBP1P61758 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.39□□□□□ -0.11
VBP1P61758 HAUS4P1-201ENST00000406739 1145 ntBASIC14.39□□□□□ -0.11
VBP1P61758 SPDYE21P-201ENST00000413323 827 ntBASIC14.39□□□□□ -0.11
VBP1P61758 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC14.39□□□□□ -0.11
VBP1P61758 SLC25A3P1-201ENST00000443844 931 ntBASIC14.39□□□□□ -0.11
VBP1P61758 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.39□□□□□ -0.11
VBP1P61758 AC091167.2-201ENST00000579581 588 ntBASIC14.39□□□□□ -0.11
VBP1P61758 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.39□□□□□ -0.11
VBP1P61758 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 ITM2C-210ENST00000620962 501 ntBASIC14.39□□□□□ -0.11
VBP1P61758 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 U82695.1-201ENST00000635752 1889 ntBASIC14.39□□□□□ -0.11
VBP1P61758 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.39□□□□□ -0.11
VBP1P61758 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
VBP1P61758 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.39□□□□□ -0.11
VBP1P61758 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VBP1P61758 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.38□□□□□ -0.11
VBP1P61758 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.38□□□□□ -0.11
VBP1P61758 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VBP1P61758 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.38□□□□□ -0.11
VBP1P61758 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.38□□□□□ -0.11
VBP1P61758 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VBP1P61758 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC14.38□□□□□ -0.11
VBP1P61758 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
VBP1P61758 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.38□□□□□ -0.11
VBP1P61758 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VBP1P61758 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VBP1P61758 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VBP1P61758 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms