Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SOX2P48431 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 RNPS1P1-201ENST00000507437 918 ntBASIC14.15□□□□□ -0.14
SOX2P48431 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 AC105339.3-201ENST00000560043 636 ntBASIC14.15□□□□□ -0.14
SOX2P48431 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.15□□□□□ -0.14
SOX2P48431 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
SOX2P48431 AC008735.5-201ENST00000623544 497 ntBASIC14.15□□□□□ -0.14
SOX2P48431 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX2P48431 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SOX2P48431 AC092127.1-201ENST00000567093 3455 ntBASIC14.15□□□□□ -0.14
SOX2P48431 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX2P48431 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX2P48431 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
SOX2P48431 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SOX2P48431 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
SOX2P48431 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.15□□□□□ -0.15
SOX2P48431 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
SOX2P48431 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 AL513480.1-201ENST00000451731 511 ntBASIC14.14□□□□□ -0.15
SOX2P48431 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX2P48431 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.14□□□□□ -0.15
SOX2P48431 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SOX2P48431 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.14□□□□□ -0.15
SOX2P48431 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SOX2P48431 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX2P48431 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.13□□□□□ -0.15
SOX2P48431 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
SOX2P48431 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SOX2P48431 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SOX2P48431 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SOX2P48431 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms