Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 AL592424.1-201ENST00000563624 1536 ntBASIC15.12■□□□□ 0.01
RFX3P48380 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.11■□□□□ 0.01
RFX3P48380 MKNK2P1-201ENST00000437526 628 ntBASIC15.11■□□□□ 0.01
RFX3P48380 ACTG1P14-201ENST00000446382 1122 ntBASIC15.11■□□□□ 0.01
RFX3P48380 AC112482.1-201ENST00000492080 688 ntBASIC15.11■□□□□ 0.01
RFX3P48380 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.11■□□□□ 0.01
RFX3P48380 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX3P48380 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX3P48380 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX3P48380 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX3P48380 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.11■□□□□ 0.01
RFX3P48380 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RFX3P48380 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFX3P48380 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RFX3P48380 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 AC024909.3-201ENST00000611513 2257 ntBASIC15.1■□□□□ 0.01
RFX3P48380 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 AL365203.3-201ENST00000609742 2057 ntBASIC15.1■□□□□ 0.01
RFX3P48380 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX3P48380 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX3P48380 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX3P48380 AC243562.1-201ENST00000560672 389 ntBASIC15.1■□□□□ 0.01
RFX3P48380 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.1■□□□□ 0.01
RFX3P48380 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
RFX3P48380 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
RFX3P48380 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFX3P48380 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms