Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.19■□□□□ 0.18
VCANP13611 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.19■□□□□ 0.18
VCANP13611 AC116345.2-201ENST00000512837 523 ntBASIC16.19■□□□□ 0.18
VCANP13611 ALG1L6P-201ENST00000515248 758 ntBASIC16.19■□□□□ 0.18
VCANP13611 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VCANP13611 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VCANP13611 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.19■□□□□ 0.18
VCANP13611 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.19■□□□□ 0.18
VCANP13611 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.19■□□□□ 0.18
VCANP13611 RTN3P1-201ENST00000536295 711 ntBASIC16.19■□□□□ 0.18
VCANP13611 PPY2P-201ENST00000582808 702 ntBASIC16.19■□□□□ 0.18
VCANP13611 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.19■□□□□ 0.18
VCANP13611 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
VCANP13611 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.19■□□□□ 0.18
VCANP13611 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.19■□□□□ 0.18
VCANP13611 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 AC074338.1-201ENST00000416825 156 ntBASIC16.18■□□□□ 0.18
VCANP13611 RPS9P1-201ENST00000419943 583 ntBASIC16.18■□□□□ 0.18
VCANP13611 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC16.18■□□□□ 0.18
VCANP13611 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.18■□□□□ 0.18
VCANP13611 AC080080.1-201ENST00000625121 2420 ntBASIC16.18■□□□□ 0.18
VCANP13611 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
VCANP13611 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VCANP13611 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VCANP13611 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCANP13611 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.18■□□□□ 0.18
VCANP13611 AC004686.1-201ENST00000605113 538 ntBASIC16.18■□□□□ 0.18
VCANP13611 MIR6858-201ENST00000620733 67 ntBASIC16.18■□□□□ 0.18
VCANP13611 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.18■□□□□ 0.18
VCANP13611 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.18■□□□□ 0.18
VCANP13611 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VCANP13611 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC16.17■□□□□ 0.18
VCANP13611 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VCANP13611 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC16.17■□□□□ 0.18
VCANP13611 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.17■□□□□ 0.18
VCANP13611 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 DPM3-202ENST00000368399 517 ntBASIC16.17■□□□□ 0.18
VCANP13611 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VCANP13611 AC011742.3-201ENST00000439053 820 ntBASIC16.17■□□□□ 0.18
VCANP13611 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.17■□□□□ 0.18
VCANP13611 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
VCANP13611 AC010503.4-201ENST00000615487 688 ntBASIC16.17■□□□□ 0.18
VCANP13611 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCANP13611 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms