Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
NPHP1O15259 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
NPHP1O15259 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP1O15259 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP1O15259 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP1O15259 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
NPHP1O15259 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP1O15259 BRWD1P1-201ENST00000401091 371 ntBASIC20.12■□□□□ 0.81
NPHP1O15259 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 HIST3H2BA-201ENST00000436555 524 ntBASIC20.12■□□□□ 0.81
NPHP1O15259 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 TDH-203ENST00000531764 1110 ntBASIC20.12■□□□□ 0.81
NPHP1O15259 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.12■□□□□ 0.81
NPHP1O15259 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP1O15259 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC20.12■□□□□ 0.81
NPHP1O15259 LINC01115-203ENST00000606068 577 ntBASIC20.12■□□□□ 0.81
NPHP1O15259 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
NPHP1O15259 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
NPHP1O15259 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP1O15259 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
NPHP1O15259 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
NPHP1O15259 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 ANKRD19P-201ENST00000338192 862 ntBASIC20.11■□□□□ 0.81
NPHP1O15259 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 SLC25A47P1-201ENST00000531577 414 ntBASIC20.11■□□□□ 0.81
NPHP1O15259 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP1O15259 MIR4538-201ENST00000581377 78 ntBASIC20.11■□□□□ 0.81
NPHP1O15259 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
NPHP1O15259 PKD1P5-201ENST00000532415 10291 ntBASIC20.11■□□□□ 0.81
NPHP1O15259 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP1O15259 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP1O15259 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP1O15259 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
NPHP1O15259 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 USP32P1-208ENST00000506594 1164 ntBASIC20.1■□□□□ 0.81
NPHP1O15259 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.1■□□□□ 0.81
NPHP1O15259 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
NPHP1O15259 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP1O15259 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP1O15259 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.1■□□□□ 0.81
NPHP1O15259 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 AL022328.1-201ENST00000610050 478 ntBASIC20.1■□□□□ 0.81
NPHP1O15259 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
NPHP1O15259 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP1O15259 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms