Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX1O00570 AC016396.2-201ENST00000562575 1417 ntBASIC16.76■□□□□ 0.27
SOX1O00570 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX1O00570 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX1O00570 AC009113.1-201ENST00000570267 2443 ntBASIC16.76■□□□□ 0.27
SOX1O00570 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX1O00570 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX1O00570 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SOX1O00570 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX1O00570 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SOX1O00570 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.75■□□□□ 0.27
SOX1O00570 AC006335.1-201ENST00000445200 547 ntBASIC16.75■□□□□ 0.27
SOX1O00570 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 AC242376.1-201ENST00000559033 726 ntBASIC16.75■□□□□ 0.27
SOX1O00570 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX1O00570 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.75■□□□□ 0.27
SOX1O00570 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SOX1O00570 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX1O00570 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.75■□□□□ 0.27
SOX1O00570 AL121723.1-201ENST00000445194 1519 ntBASIC16.75■□□□□ 0.27
SOX1O00570 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX1O00570 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SOX1O00570 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.74■□□□□ 0.27
SOX1O00570 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SOX1O00570 TPM3P8-201ENST00000330554 643 ntBASIC16.74■□□□□ 0.27
SOX1O00570 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX1O00570 AC012362.1-201ENST00000434906 739 ntBASIC16.74■□□□□ 0.27
SOX1O00570 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX1O00570 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX1O00570 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX1O00570 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX1O00570 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SOX1O00570 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX1O00570 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX1O00570 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX1O00570 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX1O00570 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX1O00570 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX1O00570 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX1O00570 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms