Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.69□□□□□ -0.22
SDCBPO00560 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.69□□□□□ -0.22
SDCBPO00560 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.69□□□□□ -0.22
SDCBPO00560 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SDCBPO00560 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.69□□□□□ -0.22
SDCBPO00560 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 HLA-A-201ENST00000376802 1334 ntBASIC13.68□□□□□ -0.22
SDCBPO00560 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
SDCBPO00560 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.68□□□□□ -0.22
SDCBPO00560 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 IGHV3-22-201ENST00000520721 359 ntBASIC13.68□□□□□ -0.22
SDCBPO00560 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.68□□□□□ -0.22
SDCBPO00560 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.68□□□□□ -0.22
SDCBPO00560 AL645728.2-201ENST00000641974 660 ntBASIC13.68□□□□□ -0.22
SDCBPO00560 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
SDCBPO00560 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SDCBPO00560 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SDCBPO00560 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SDCBPO00560 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.67□□□□□ -0.22
SDCBPO00560 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.67□□□□□ -0.22
SDCBPO00560 U82695.1-201ENST00000635752 1889 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
SDCBPO00560 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.67□□□□□ -0.22
SDCBPO00560 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SDCBPO00560 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
SDCBPO00560 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SDCBPO00560 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
SDCBPO00560 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.67□□□□□ -0.22
SDCBPO00560 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.67□□□□□ -0.22
SDCBPO00560 AC079776.4-201ENST00000511039 504 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 RNA5SP419-201ENST00000515908 135 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 AL031432.2-201ENST00000566714 459 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 AL928711.1-201ENST00000570165 459 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SDCBPO00560 AC021097.1-201ENST00000607902 574 ntBASIC13.67□□□□□ -0.22
SDCBPO00560 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms