Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.34■□□□□ 0.05
PDLIM1O00151 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PDLIM1O00151 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 TMBIM7P-203ENST00000641617 1718 ntBASIC15.34■□□□□ 0.05
PDLIM1O00151 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.34■□□□□ 0.05
PDLIM1O00151 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PDLIM1O00151 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.33■□□□□ 0.05
PDLIM1O00151 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PDLIM1O00151 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.33■□□□□ 0.05
PDLIM1O00151 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.33■□□□□ 0.04
PDLIM1O00151 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.33■□□□□ 0.04
PDLIM1O00151 AC092919.2-201ENST00000623631 1645 ntBASIC15.33■□□□□ 0.04
PDLIM1O00151 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.33■□□□□ 0.04
PDLIM1O00151 MIR648-201ENST00000385046 94 ntBASIC15.33■□□□□ 0.04
PDLIM1O00151 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.33■□□□□ 0.04
PDLIM1O00151 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PDLIM1O00151 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
PDLIM1O00151 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.33■□□□□ 0.04
PDLIM1O00151 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 HLA-A-201ENST00000376802 1334 ntBASIC15.33■□□□□ 0.04
PDLIM1O00151 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PDLIM1O00151 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 AL356585.2-201ENST00000625078 2396 ntBASIC15.33■□□□□ 0.04
PDLIM1O00151 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.33■□□□□ 0.04
PDLIM1O00151 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM1O00151 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PDLIM1O00151 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PDLIM1O00151 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PDLIM1O00151 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM1O00151 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM1O00151 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.32■□□□□ 0.04
PDLIM1O00151 AL031284.1-201ENST00000419297 478 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms