Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
PCDHGA1Q9Y5H4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC108725.1-201ENST00000495472 409 ntBASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC124283.3-201ENST00000570869 594 ntBASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 AC080080.1-201ENST00000625121 2420 ntBASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDHGA1Q9Y5H4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDHGA1Q9Y5H4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms