Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PRAL-201ENST00000624952 3286 ntBASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 SPDYE22P-201ENST00000582158 798 ntBASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 RN7SL275P-201ENST00000582762 335 ntBASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AL132655.2-201ENST00000596276 594 ntBASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 AC092127.1-201ENST00000567093 3455 ntBASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM35Q9UPQ4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM35Q9UPQ4 AC007541.1-201ENST00000570282 1469 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 SLC7A15P-201ENST00000424028 1363 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 AL035633.1-201ENST00000406139 838 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 AC092473.1-201ENST00000441098 221 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 MIR8072-201ENST00000614241 80 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 AC008741.2-201ENST00000612792 3115 ntBASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM35Q9UPQ4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 CLK3P2-201ENST00000427566 1453 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 PIN1P1-201ENST00000412108 996 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 AC098850.1-201ENST00000419919 790 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 CRB3P1-201ENST00000449338 276 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 AC017007.3-201ENST00000479865 435 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM35Q9UPQ4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM35Q9UPQ4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms