Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 AC105021.1-202ENST00000570572 669 ntBASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 AC007967.4-201ENST00000614700 386 ntBASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CUEDC1Q9NWM3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 CNN2P2-201ENST00000443536 909 ntBASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 CNN2P3-201ENST00000450201 906 ntBASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 AL136317.3-201ENST00000618497 906 ntBASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CUEDC1Q9NWM3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.52■□□□□ 0.07
CUEDC1Q9NWM3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 AL691432.1-201ENST00000596308 1422 ntBASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 MTND6P24-201ENST00000440466 518 ntBASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 FAM207CP-201ENST00000443486 507 ntBASIC15.51■□□□□ 0.07
CUEDC1Q9NWM3 AL139010.1-201ENST00000454878 894 ntBASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms