Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AL592309.1-201ENST00000443127 649 ntBASIC16.56■□□□□ 0.24
PCDH9Q9HC56 IGHV3-62-201ENST00000520057 340 ntBASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AC073389.1-201ENST00000595595 795 ntBASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AC022145.2-201ENST00000598203 171 ntBASIC16.56■□□□□ 0.24
PCDH9Q9HC56 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AC134407.2-201ENST00000625089 1978 ntBASIC16.56■□□□□ 0.24
PCDH9Q9HC56 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC105233.2-201ENST00000523697 349 ntBASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AF228730.5-201ENST00000530288 346 ntBASIC16.55■□□□□ 0.24
PCDH9Q9HC56 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AL513210.1-201ENST00000629608 234 ntBASIC16.55■□□□□ 0.24
PCDH9Q9HC56 AC134684.3-201ENST00000641758 218 ntBASIC16.55■□□□□ 0.24
PCDH9Q9HC56 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PCDH9Q9HC56 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 AP000344.2-201ENST00000512987 629 ntBASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 KRT8P23-201ENST00000560090 1207 ntBASIC16.54■□□□□ 0.24
PCDH9Q9HC56 LINC01225-203ENST00000563550 1244 ntBASIC16.54■□□□□ 0.24
PCDH9Q9HC56 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 AC087481.3-201ENST00000602886 1894 ntBASIC16.54■□□□□ 0.24
PCDH9Q9HC56 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDH9Q9HC56 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms