Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 RPL17P11-201ENST00000417593 544 ntBASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 AC138649.2-201ENST00000615886 705 ntBASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 UBALD1-205ENST00000590891 2641 ntBASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 AC005915.1-201ENST00000624912 2018 ntBASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF541Q9H0D2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 AP001282.1-201ENST00000531301 1499 ntBASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF541Q9H0D2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 RNU1-114P-201ENST00000365297 166 ntBASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 MIR769-201ENST00000390225 118 ntBASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 AC134698.3-201ENST00000523880 214 ntBASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.85■□□□□ 0.61
ZNF541Q9H0D2 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms