Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28BQ9BUN5 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AP002414.2-201ENST00000591780 3365 ntBASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AL031432.2-201ENST00000566714 459 ntBASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AL928711.1-201ENST00000570165 459 ntBASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 MIR4321-201ENST00000592276 80 ntBASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 C18orf15-201ENST00000623680 2534 ntBASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28BQ9BUN5 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 WASH6P-202ENST00000359512 1437 ntBASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 OR7E14P-202ENST00000530490 1290 ntBASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 MIR1199-201ENST00000621445 119 ntBASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28BQ9BUN5 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms