Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 AC104692.2-201ENST00000603054 253 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 Z83851.2-201ENST00000609564 659 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 AP003680.1-201ENST00000598970 3660 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 BCAR1-209ENST00000546196 1340 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 LINC00554-201ENST00000564841 3011 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 AC073347.1-201ENST00000421633 2643 ntBASIC12.05□□□□□ -0.48
LINC00477Q96M19 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC025580.3-201ENST00000617932 1424 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC103702.1-201ENST00000548801 2630 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC002056.1-201ENST00000395613 760 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AL450487.1-201ENST00000426799 995 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 IRF5-214ENST00000613821 595 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC004877.2-201ENST00000623941 599 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms