Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AC020916.1-201ENST00000587762 1774 ntBASIC15.86■□□□□ 0.13
TTC28Q96AY4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 NAP1L6-202ENST00000641404 1222 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 KRT8P21-201ENST00000430398 1491 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 AC021723.1-201ENST00000486306 515 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 MIR4522-201ENST00000584932 87 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.85■□□□□ 0.13
TTC28Q96AY4 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 AC116353.5-201ENST00000638148 1699 ntBASIC15.85■□□□□ 0.13
TTC28Q96AY4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TTC28Q96AY4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 HLA-A-202ENST00000376806 1854 ntBASIC15.84■□□□□ 0.13
TTC28Q96AY4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC103810.10-201ENST00000606504 343 ntBASIC15.84■□□□□ 0.13
TTC28Q96AY4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 BNIP3P1-202ENST00000550043 1585 ntBASIC15.84■□□□□ 0.13
TTC28Q96AY4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC020931.1-201ENST00000589622 1346 ntBASIC15.84■□□□□ 0.13
TTC28Q96AY4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms