Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 MIR770-201ENST00000390219 98 ntBASIC14.41□□□□□ -0.1
CPNE4Q96A23 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 BASP1P1-201ENST00000430708 665 ntBASIC14.41□□□□□ -0.1
CPNE4Q96A23 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 SERBP1P3-201ENST00000459980 809 ntBASIC14.41□□□□□ -0.1
CPNE4Q96A23 AC097493.3-201ENST00000509725 367 ntBASIC14.41□□□□□ -0.1
CPNE4Q96A23 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CPNE4Q96A23 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.41□□□□□ -0.1
CPNE4Q96A23 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SPDYE17-201ENST00000412399 783 ntBASIC14.4□□□□□ -0.1
CPNE4Q96A23 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 RNA5SP421-201ENST00000516864 134 ntBASIC14.4□□□□□ -0.1
CPNE4Q96A23 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 AL355385.1-201ENST00000606123 409 ntBASIC14.4□□□□□ -0.1
CPNE4Q96A23 AL138828.2-201ENST00000615812 383 ntBASIC14.4□□□□□ -0.1
CPNE4Q96A23 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.4□□□□□ -0.1
CPNE4Q96A23 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CPNE4Q96A23 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.4□□□□□ -0.11
CPNE4Q96A23 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CPNE4Q96A23 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CPNE4Q96A23 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CPNE4Q96A23 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CPNE4Q96A23 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.39□□□□□ -0.11
CPNE4Q96A23 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms