Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC4Q92889 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC4Q92889 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ERCC4Q92889 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
ERCC4Q92889 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.22■□□□□ 0.51
ERCC4Q92889 AC092474.2-201ENST00000424288 719 ntBASIC18.22■□□□□ 0.51
ERCC4Q92889 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.22■□□□□ 0.51
ERCC4Q92889 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
ERCC4Q92889 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC4Q92889 AL078644.1-201ENST00000609881 752 ntBASIC18.22■□□□□ 0.51
ERCC4Q92889 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.22■□□□□ 0.51
ERCC4Q92889 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.22■□□□□ 0.51
ERCC4Q92889 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.22■□□□□ 0.51
ERCC4Q92889 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ERCC4Q92889 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ERCC4Q92889 AC018892.3-201ENST00000623986 2499 ntBASIC18.22■□□□□ 0.51
ERCC4Q92889 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.21■□□□□ 0.51
ERCC4Q92889 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
ERCC4Q92889 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
ERCC4Q92889 AC020658.6-201ENST00000623564 1870 ntBASIC18.21■□□□□ 0.51
ERCC4Q92889 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 HAUS4P1-201ENST00000406739 1145 ntBASIC18.21■□□□□ 0.51
ERCC4Q92889 AP001005.1-201ENST00000571755 1248 ntBASIC18.21■□□□□ 0.51
ERCC4Q92889 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.21■□□□□ 0.51
ERCC4Q92889 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.21■□□□□ 0.51
ERCC4Q92889 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.21■□□□□ 0.51
ERCC4Q92889 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
ERCC4Q92889 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ERCC4Q92889 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
ERCC4Q92889 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.21■□□□□ 0.51
ERCC4Q92889 HLA-A-201ENST00000376802 1334 ntBASIC18.21■□□□□ 0.51
ERCC4Q92889 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.21■□□□□ 0.51
ERCC4Q92889 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
ERCC4Q92889 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.21■□□□□ 0.5
ERCC4Q92889 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 AC091951.1-201ENST00000512854 2465 ntBASIC18.2■□□□□ 0.5
ERCC4Q92889 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
ERCC4Q92889 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.2■□□□□ 0.5
ERCC4Q92889 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.2■□□□□ 0.5
ERCC4Q92889 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.2■□□□□ 0.5
ERCC4Q92889 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.2■□□□□ 0.5
ERCC4Q92889 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.2■□□□□ 0.5
ERCC4Q92889 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 AC004877.2-201ENST00000623941 599 ntBASIC18.2■□□□□ 0.5
ERCC4Q92889 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 AC138035.3-201ENST00000622706 2791 ntBASIC18.2■□□□□ 0.5
ERCC4Q92889 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.2■□□□□ 0.5
ERCC4Q92889 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.2■□□□□ 0.5
ERCC4Q92889 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ERCC4Q92889 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms