Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 BNIP3P1-202ENST00000550043 1585 ntBASIC16■□□□□ 0.15
HMGB4Q8WW32 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 TARDBPP1-201ENST00000442013 1203 ntBASIC16■□□□□ 0.15
HMGB4Q8WW32 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16■□□□□ 0.15
HMGB4Q8WW32 CTBP2P5-201ENST00000454986 1264 ntBASIC16■□□□□ 0.15
HMGB4Q8WW32 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 MIR5189-201ENST00000577370 114 ntBASIC16■□□□□ 0.15
HMGB4Q8WW32 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16■□□□□ 0.15
HMGB4Q8WW32 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB4Q8WW32 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
HMGB4Q8WW32 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
HMGB4Q8WW32 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 PDIA3P1-201ENST00000471856 1510 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 FAM86MP-201ENST00000340703 885 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 AC074338.1-201ENST00000416825 156 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 KLF2P4-201ENST00000451959 1225 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 AL359711.2-201ENST00000563105 872 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.99■□□□□ 0.15
HMGB4Q8WW32 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB4Q8WW32 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
HMGB4Q8WW32 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB4Q8WW32 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB4Q8WW32 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB4Q8WW32 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB4Q8WW32 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms