Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 PRAL-201ENST00000624952 3286 ntBASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX2-3Q8TAU0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC135586.1-201ENST00000539323 574 ntBASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 LINC01115-203ENST00000606068 577 ntBASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC026979.3-201ENST00000607315 403 ntBASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AL109936.8-201ENST00000641772 604 ntBASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX2-3Q8TAU0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
NKX2-3Q8TAU0 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 AL607033.1-201ENST00000623900 1599 ntBASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 TARDBPP1-201ENST00000442013 1203 ntBASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX2-3Q8TAU0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms