Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 CNN2P2-201ENST00000443536 909 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 CNN2P3-201ENST00000450201 906 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 PHKG1P2-201ENST00000457537 863 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 AC015911.4-201ENST00000588022 1070 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 AL136317.3-201ENST00000618497 906 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 Z92544.3-201ENST00000624747 417 ntBASIC17.27■□□□□ 0.36
KRT39Q6A163 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.27■□□□□ 0.36
KRT39Q6A163 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
KRT39Q6A163 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
KRT39Q6A163 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.35
KRT39Q6A163 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.27■□□□□ 0.35
KRT39Q6A163 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.35
KRT39Q6A163 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
KRT39Q6A163 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
KRT39Q6A163 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
KRT39Q6A163 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
KRT39Q6A163 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.26■□□□□ 0.35
KRT39Q6A163 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.26■□□□□ 0.35
KRT39Q6A163 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.26■□□□□ 0.35
KRT39Q6A163 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.26■□□□□ 0.35
KRT39Q6A163 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.26■□□□□ 0.35
KRT39Q6A163 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.26■□□□□ 0.35
KRT39Q6A163 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KRT39Q6A163 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
KRT39Q6A163 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 TUBB3P1-201ENST00000405796 1332 ntBASIC17.25■□□□□ 0.35
KRT39Q6A163 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
KRT39Q6A163 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
KRT39Q6A163 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KRT39Q6A163 FO393414.2-201ENST00000405153 598 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms